serverCASPER

Acronimo di Cluster Appliance for Scientific Parallel Execution and Rendering, è il sistema storico del centro HPC@POLITO. Si tratta di un cluster InfiniBand da oltre 4 TFLOPS con le seguenti caratteristiche:

ArchitectureLinux Infiniband-DDR MIMD Distributed Shared-Memory Cluster
Node InterconnectInfiniband DDR 20 Gb/s
Service NetworkGigabit Ethernet 1 Gb/s
CPU Model2x AMD Opteron 6276/6376 (Bulldozer) 2.3 GHz (turbo 3.0 GHz) 16 cores
Sustained performance4.360 TFLOPS (last update: 2014)
Peak performance5.658 TFLOPS (last update: 2014)
Green500 Index422.31 MFLOPS/W
Power Consumption3.6 kW
Computing Cores544
Number of Nodes17
Total RAM Memory2.2 TB DDR3 REGISTERED ECC
OSROCKS Clusters 6.1
SchedulerGridEngine 2011.11p1

softwareSoftware disponibile

ROCKS 6.1 included softwarePrograms and libraries for technical and high performance computing included in the ROCKS 6.1 cluster distribution
AMD Open64AMD compilers optimized for Opteron Bulldozer architecture
AMD Core Math LibraryOpteron optimized BLAS, LAPACK, FFTs and random number generators
Blender 3D 2.59, 2.69, 2.71 e 2.763D creation for everyone, free to use for any purpose (cit.)
bsoft 1.8.8Toolset for image and molecular processing in Structural Biology
IBM ILOG CPLEX 12.6.0.0High-performance mathematical programming solver for linear programming, mixed integer programming, and quadratic programming
ctffind3 3.5 + ctftilt 1.7Programs for finding CTFs of electron micrographs in Molecolar Biology
EMAN2 2.0.7Broadly based greyscale scientific image processing suite
GotoBLAS2Very fast multithreaded BLAS implementation
Gromacs 4.6.5, 4.6.7 and 5.0-beta2A versatile tool for molecular dynamics
em2em 2014_01_0 and FSC 2014_01_07Program to calculate the Fourier Shell Correlation of two 2-D images or two 3-D volumes
Intel ComposerIntel compiler suite and libraries
Matlab 8.3 R2014aThe language of technical computing (cit.)
Neuron 7.3A tool for building and using computational models of neurons and networks of neurons
Octave 3.6.4 and 3.8.0High-level interpreted language, primarily intended for numerical computations
OpenFOAM 2.3.1Free, open source Computational Fluid Dynamics software package, plus 3rd party SW
Quantum Espresso 5.3.0Integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale
Spider 21.04System for processing image data from electron microscopy and related fields
Star CCM+ 8.04, 9.02, 10.04 e 10.06Simulation of Turbulent flow in Arbitrary Regions and Computational Continuum Mechanics
LAMMPS 7Dec15A classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator
Python 2.7 e 3.2A programming language that lets you work quickly and integrate systems more effectively
The GNU GCC 4.8.2 SuiteThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, Ada, and Go, as well as libraries for these languages
FFTW 3.3.4FFTW is a C library for computing the discrete Fourier transform (DFT)
ELK 3.1.12An all-electron full-potential linearised augmented-planewave (FP-LAPW) code
ScipionAn image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
GRASS-GIS 7.0.0A Geographic Information System software suite used for geospatial data management and analysis, image processing, graphics and maps production...
GSL 1.16The GNU Scientific Library is a numerical library for C and C++ programmers
liggghts 3Open Source Discrete Element Method Particle Simulation Code